University of Oxford
Name of the laboratory
- LRF Haemato-oncology Group
- Nuffield Department of Clinical Laboratory Sciences, University of Oxford
- Level 4 Academic Block
- University of Oxford
- Headington, Oxford, OX3 9DU, United Kingdom
- +44 1865 220246
Prof Alison Banham’s Haemato-oncology group are focussed on identifying and understanding molecular pathways that are fundamentally required for the pathogenesis of human malignancies (particularly B-cell lymphomas). The aim is to then translate this knowledge into the development of novel cancer biomarkers and therapies. The group are particularly experienced in monoclonal antibody production and characterisation and are actively involved in the European Monoclonal Antibodies Network. Together with its extensive network of collaborators the laboratory uses a multidisciplinary experimental approach exploiting a wide range of biochemical, structural, immunological, pathological, cell biology, molecular, and bioinformatics techniques to pursue its research goals. The group are primarily supported by Programme grant awards from the UK charities Leukaemia and Lymphoma Research and Cancer Research UK.
1) Therapeutic Antibody Programme
Monoclonal antibodies represent some of the most effective new drugs being used to treat cancer. We have produced novel antibodies targeting the tumour vasculature that recognise both known and novel proteins with a role in angiogenesis, with the aim of generating new drugs that disrupt the tumour blood supply. We have also generated TCR mimic antibodies, which extend the scope of classical therapeutic antibody targets to include intracellular tumour proteins via the specific recognition of tumour-derived peptides presented on the tumour cell surface by MHC class I molecules.
2) Transcriptional deregulation in cancer
The altered patterns of gene expression arising from inappropriate regulation and/or function of key transcription factors cause many human diseases, including cancer. We previously discovered the human FOXP1 forkhead transcription factor and it’s roles in the pathogenesis of both lymphomas and carcinomas, while we identified overexpression of the related FOXP2 protein in the incurable malignancy multiple myeloma. In collaboration with Dr Giovanna Roncador, we were the first to make monoclonal antibodies to the regulatory T-cell marker FOXP3, and have demonstrated across a number of tumour types that these reagents can be used to quantify the numbers of these cells in patients’ biopsies and predict clinical outcomes such as survival or late relapse. Further studies of the FOXP family, and NFIL3 (a transcription factor essential for the NK lineage) are being pursued by studying their expression, regulation, involvement in pathways that affect cellular survival and proliferation, combined with the identification and characterisation of their co-factors and target genes.
3) Lymphoma antigens
Naturally occurring antibodies have been used to identify tumour proteins that are recognised by lymphoma patients’ immune systems via SEREX and protein array screening. These molecules, including a novel cancer testis antigen (PASD1) and an endocytic/lysosomal protein (HIP1R) are being further investigated as new disease markers, prognostic indicators and/or as candidates for vaccine development leading to cancer immunotherapy.
- monoclonal antibody production in mice
- gene cloning and preparation of transfection constructs
- recombinant protein expression in bacteria and mammalian cells
- antibody characterisation
- RNAi to confirm antibody specificity
- single, double and triple immunostaining techniques
- bacterial expression cloning of antigens recognised by antibodies
- immunological techniques eg. immunoprecipitation and western blotting
- Chromatin immunoprecipitation
- Characterisation of humoral immune responses to tumour proteins
- Antibody purification
- Antibody gene cloning, recombinant antibody expression, isotype switching and production of chimeric antibodies
- Production and characterisation of TCR mimic antibodies
- Testing candidate therapeutic antibodies in pre-clinical xenograft models
- P.J. Brown, K.K. Wong, S. L. Felce, L. Lyne, H. Spearman, E.J. Soilleux, L.M. Pederson, M.B. Moller, T.M. Green, D.M. Gascoyne, A.H. Banham, 2016. FOXP1 suppresses immune response signatures and MHC class II expression in activated B-cell-like diffuse large B-cell lymphomas. Leukemia, epub ahead of print.
- G. Roncador, P. Engel, L. Maestre, A.P. Anderson, J.L. Cordell, M.S. Cragg, V.C. Šerbec. M. Jones, V.L. Lisnic, L. Kremer, D. Li, F. Koch-Nolte, N. Pascual, J.I. Rodríguez-Barbosa, R. Torensma, H. Turley, K. Pulford, A.H. Banham, 2016. The European Antibody Network’s practical guide to finding and validating suitable antibodies for research. Mabs 8(1):27-36.
- S.E. Brooks, S.A. Bonney, C. Lee, A. Publicover, G. Khan, E.L. Smits, D. Sigurdardottir, M. Arno, D. Li, K.L. Mills, K. Pulford, A.H. Banham, V. van Tendeloo, G.J. Mufti, H-G Rammensee, T.J. Elliot, K.H. Orchard, B-A Guinn, 2015. Application of the pMHC array to characterise tumour antigen specific T cell populations in leukaemia patients at disease diagnosis. PLOS One Oct 22;10(10):e0140483. doi: 10.1371/journal.pone.0140483. eCollection 2015
- K.K. Wong, E.S. Ch’ng, S.K. Loo, A. Husin, M.A. Muruzabal, M.B. Møller, L.M. Pedersen, M.P. Pomposo, A. Gaafar, A.H. Banham, T.M. Green, C.H. Lawrie, 2015. Low HIP1R mRNA and protein expression are associated with worse survival in diffuse large B-cell lymphoma patients treated with R-CHOP. Expt Mol Path 99: 537-545.
- G. Deng, Y. Nagai, Y. Xiao, Z. Li, S. Dai, T. Ohtani, A. Banham, B. Li, H. Zhang, S-L. Wu, W. Hancock, A. Samanta, H. Zhang, M.I. Greene, 2015. Pim-2 kinase influences T regulatory cell function and stability by mediating Foxp3 N-terminal phosphorylation. J Biol Chem 290(33):20211-20.
- D.M. Gascoyne, H. Spearman, L. Lyne, R. Puliyadi, M. Pérez-Alcántara, L. Coulton, S.E. Fisher, P.I. Croucher, A. H. Banham, 2015. The forkhead transcription factor FOXP2 is required for regulation of p21WAF1/CIP1 in 143B osteosarcoma cell growth arrest. PLOS One 10(6):e0128513.
- A.K. Michael, S.L. Harvey, P.J. Sammons, A.P. Anderson, H.M. Kopalle, A.H. Banham, C.L. Partch, 2015. Cancer/testis antigen PASD1 silences the circadian clock. Molecular Cell 58:743-54.
- J.F. Collin, J.W. Wells, B. Czepulkowski, L. Lyne, P.J. Duriez, A.H. Banham, G.J. Mufti, B-A Guinn. A novel zinc finger gene, ZNF465, is inappropriately expressed in acute myeloid leukaemia cells. Genes Chromosomes and Cancer 54:288-302.
- D.M. Favara, A.H. Banham, A.L. Harris, 2014. A review of ELTD1, a pro-angiogenic adhesion GPCR. Biochem Soc Trans. 42(6):1658-64.
- D. Li, M. Masiero, A.H. Banham, A.L. Harris, 2014. The Notch ligand Jagged1 as a target for anti-tumour therapy. Front Oncol. Sep 25;4:254. Doi 10.3389/fonc.2014.00254
- T. Negoro, S. Shimizu, M. Narushima, A.H. Banham, H. Wakabayashi, R. Takayanagi, T. Hagiwara, G. Roncador, T. Osabe, T. Yanai, M. Kin, K. Ikeda, A. Endo, H. Akiyama, Y. Nakano, 2014. Elevated receptor for activated C kinase 1 expression is involved in intra-cellular Ca2+ influx and potentially associated with compromised Tregs function in patients with asthma. Clin. Expt. Allergy. 44(9):1154-69.
- S. Patel, D. Murphy, E. Haralambieva, Z.A. Abdulla, K-K. Wong, H. Chen, E. Gould, G. Roncador, C.S.R. Hatton, A.P. Anderson, A.H. Banham, K. Pulford, 2014. Increased expression of phosphorylated FADD in anaplastic large cell and other T-cell lymphomas. Biomarker Insights 9: 77-84.
- K.-K. Wong, D.M. Gascoyne, P.J. Brown, E. Soilleux, C. Snell, H. Chen, L. Lyne, C.H. Lawrie, R.D. Gascoyne, L. M. Pedersen, M.B. Møller, K. Pulford, D. Murphy, T. M. Green, A.H. Banham, 2014. Reciprocal expression of the endocytic protein HIP1R and its repressor FOXP1 predicts outcome in R-CHOP-treated diffuse large B-cell lymphoma patients. Leukemia 28(2):362-72.
- S.K. Williams, E. Donaldson, T. Van der Kleij, L. Dixon, M. Fisher, J. Tibble, Y. Gilleece, P. Klenerman, A.H. Banham, M. Howard, D.P. Webster. Quantification of hepatic FOXP3+ T-lymphocytes in HIV-hepatitis C co-infection. J Viral Hepat 21(4):251-9.
- P. Whiteman, B. Hernandez de Madrid, P. Tayor, D. Li, R. Heslop, N. Viticheep, J. Zi Tan, H. Shimizu, J. Callaghan, M. Masiero, J-L. Li, A.H. Banham, A.L. Harris, S.M. Lea, C. Redfield, M. Baron, P.A. Handford. 2013. Molecular basis for Jagged-1/Serrate recognition by Notch. J Biol Chem. 288:7305-12.
- S. Patel, H. Chen, L. Monti, E. Gould, E. Haralambieva, J. Schmid, D. Toomey, W. Woessmann, G. Roncador, C.S.R. Hatton, A.P. Liggins, R. Taramelli, A.H. Banham, F. Acquati, D. Murphy, K. Pulford. 2012. RNASET2 – an autoantigen in anaplastic large cell lymphoma identified by protein array analysis. J Proteomics 75:5279-92.
- D Yusuf, S.L Butland, M.I Swanson, E Bolotin, A Ticoll, W.A Cheung, X Yu, C Zhang, C.T.D Dickman, D.L Fulton, J.S Lim, J.M Schnabl, O.H.P Ramos, M Vasseur- Cognet, C.N de Leeuw, E.M Simpson, G.U Ryffel, E.W-F Lam, R Kist, M.S.C Wilson, R Marco-Ferreres, J.J Brosens, L.L Beccari, P Bovolenta, B.A Benayoun, L.J Monteiro, H.D.C Schwenen, L Grontved, E Wederell, S Mandrup, R.A Veitia, H Chakravarthy, P.A Hoodless, M.M Mancarelli, B.E Torbett, A.H Banham, S.P Reddy, R.L Cullum, M Liedtke, M.P Tschan, M Vaz, A Rizzino, M Zannini, S Frietze, P.J Farnham, A Eijkelenboom, P.J Brown, D Laperrière, D Leprince, T de Cristofaro, K.L Prince, M Putker, L del Peso, G Camenisch, R.H Wenger, M Mikula, M Rozendaal, S Mader, J Ostrowski, S.J Rhodes, C Van Rechem, G Boulay, S.W.Z Olechnowicz, M.B Breslin, M.S Lan, K.K Nanan, M Wegner, J Hou, R.D Mullen, S.C Colvin, P.J Noy, C.F Webb, M.E Witek, S Ferrell, J.M Daniel, J Park, S.A Waldman, D.J Peet, M Taggart, P-S Jayaraman, J.J Karrich, B Blom, F Vesuna, H O'Geen, Y Sun, R.M Gronostajski, M.W Woodcroft, M.R Hough, E Chen, G.N Europe-Finner, M Karolczak-Bayatti, J Bailey, O Hankinson, V Raman, D.P LeBrun, S Biswal, C.J Harvey, J.P DeBruyne, J.B Hogenesch, R.F Hevner, C Héligon, X.M Luo, M.C Blank, K.J Millen, D.S Sharlin, D Forrest, K Dahlman- Wright, C Zhao, Y Mishima, S Sinha, R Chakrabarti, E Portales-Casamar, F.M Sladek, P.H Bradley and W.W Wasserman. The Transcription Factor Encyclopedia. Genome Biology 13:R24 (2012).
- T. Negoro, S. Shimizu, Y. Yamamoto, A.H. Banham, G. Roncador, H. Akiyama, Y. Nakano. 2012. Chapter 4 - Immune Mechanisms of Childhood Asthma p77-88, in ‘Bronchial Asthma’ publisher InTec Open Access.
- CroatiaStipan JonjicUniversity of Rijeka
- FranceAndré PèlegrinInstitut de Recherche en Cancérologie de Montpellier, IRCM
- FranceArmand BensussanHôpital Saint Louis
- FrancePierre LafayeInstitut Pasteur
- GermanyFriedrich Koch-NolteUniversity Medical Center Hamburg-Eppendorf
- HungaryJohanna SymmonsEnglish & Scientific Consulting Kft. (SCICONS)
- HungaryPeter BaloghClinical Center, University of Pecs
- ItalyFabio MalavasiUniversity of Torino Medical School
- RussiaAlexander TaraninInstitute of Molecular and Cellular Biology
- RussiaAlexander FilatovInstitute of Immunology
- SloveniaVladka Čurin ŠerbecBlood Trasfusion Centre of Slovenia
- SpainGiovanna RoncadorCentro Nacional de Investigaciones Oncológicas
- SpainJosé I. Rodríguez BarbosaInstituto Universitario de Biomedicina
- SpainLeonor KremerCentro Nacional de Biotecnología/CSIC
- SpainNúria PascualNb4D
- SpainPablo EngelMedical School, University of Barcelona
- United KingdomUniversity of OxfordLRF Haemato-oncology Group
- United KingdomVertebrate Antibodies Limited (VAL)
- United KingdomUniversity of OxfordOxFabs
- United KingdomKing's College LondonSt. John's Institute of Dermatology